Sinergia Consortium Brain Communication Pathways

Publications

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  2021 (6)
Rubega, M.; Formaggio, E.; Di Marco, R.; Bertuccelli, M.; Tortora, S.; Menegatti, E.; Cattelan, M.; Bonato, P.; Masiero, S.; and Del Felice, A. Cortical correlates in upright dynamic and static balance in the elderly. Scientific Reports, 11(1): 1–15. 2021.
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Formaggio, E.; Rubega, M.; Rupil, J.; Antonini, A.; Masiero, S.; Toffolo, G. M.; and Del Felice, A. Reduced Effective Connectivity in the Motor Cortex in Parkinson’s Disease. Brain Sciences, 11(9): 1200. 2021.
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Rué-Queralt, J.; Glomb, K.; Pascucci, D.; Tourbier, S.; Carboni, M.; Vulliémoz, S.; Plomp, G.; and Hagmann, P. The connectome spectrum as a canonical basis for a sparse representation of fast brain activity. NeuroImage, 244: 118611. 2021.
The connectome spectrum as a canonical basis for a sparse representation of fast brain activity [link]Paper   doi   link   bibtex   abstract   2 downloads  
Pascucci, D.; Rubega, M.; Rué-Queralt, J.; Tourbier, S.; Hagmann, P.; and Plomp, G. Structure supports function: informing directed and dynamic functional connectivity with anatomical priors. bioRxiv. 2021.
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Pascucci, D.; Tourbier, S.; Rue-Queralt, J.; Carboni, M.; Hagmann, P.; and Plomp, G. Source imaging of high-density visual evoked potentials with multi-scale brain parcellations and connectomes. bioRxiv. 2021.
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Glomb, K.; Kringelbach, M. L; Deco, G.; Hagmann, P.; Pearson, J.; and Atasoy, S. Functional harmonics reveal multi-dimensional basis functions underlying cortical organization. Cell Reports, 36(8): 109554. 2021.
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  2020 (5)
Glomb, K.; Queralt, J. R.; Pascucci, D.; Defferrard, M.; Tourbier, S.; Carboni, M.; Rubega, M.; Vulliemoz, S.; Plomp, G.; and Hagmann, P. Connectome spectral analysis to track EEG task dynamics on a subsecond scale. NeuroImage, 221: 117137. 2020.
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Glomb, K.; Mullier, E.; Carboni, M.; Rubega, M.; Iannotti, G.; Tourbier, S.; Seeber, M.; Vulliemoz, S.; and Hagmann, P. Using structural connectivity to augment community structure in EEG functional connectivity. Network Neuroscience, 4(3): 761–787. 2020.
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Glomb, K.; Cabral, J.; Cattani, A.; Mazzoni, A.; Raj, A.; and Franceschiello, B. Computational models in Electroencephalography. arXiv preprint arXiv:2009.08385. 2020.
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Pascucci, D.; Rubega, M.; and Plomp, G. Modeling time-varying brain networks with a self-tuning optimized Kalman filter. PLoS computational biology, 16(8): e1007566. 2020.
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Tourbier, S.; Aleman-Gomez, Y.; Mullier, E.; Griffa, A.; Bach Cuadra, M.; and Hagmann, P. Connectome Mapper 3: a software pipeline for multi-scale connectome mapping of multimodal MR data. In 26th Annual Meeting of the Organization for Human Brain Mapping (OHBM), Online, June 2020.
Connectome Mapper 3: a software pipeline for multi-scale connectome mapping of multimodal MR data [pdf]Paper   link   bibtex   1 download  
  2019 (8)
Pizzolato, M.; Yu, T.; Canales-Rodriguez, E. J.; and Thiran, J. Robust T2 relaxometry with Hamiltonian MCMC for myelin water fraction estimation. In In IEEE International Symposium on Biomedical Imaging (ISBI), Venice, Italy, Venice, Italy, 2019.
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Pizzolato, M.; Deriche, R.; Canales-Rodriguez, E. J.; and Thiran, J. Spatially varying Monte Carlo SURE for the regularization of biomedical images. In In IEEE International Symposium on Biomedical Imaging (ISBI), Venice, Italy., Venice, Italy, 2019.
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Canales-Rodriguez, E. J.; Pizzolato, M.; Piredda, G. F.; Kunz, N.; Kober, T.; Thiran, J.; Pot, C.; and Daducci, A. Robust myelin water imaging from multi-echo T2 data using second-order Tikhonov regularization with control points. In Montreal, Canada, 2019.
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van Mierlo, P.; Holler, Y.; Focke, N. K.; and Vulliemoz, S. Network Perspectives on Epilepsy Using EEG/MEG Source Connectivity. Front Neurol, 10: 721. 2019.
Network Perspectives on Epilepsy Using EEG/MEG Source Connectivity [link]Paper   doi   link   bibtex   abstract   1 download  
Coito, A.; Michel, C. M.; Vulliemoz, S.; and Plomp, G. Directed functional connections underlying spontaneous brain activity. Hum Brain Mapp, 40(3): 879-888. 2019.
Directed functional connections underlying spontaneous brain activity [link]Paper   doi   link   bibtex   abstract   3 downloads  
Coito, A.; Biethahn, S.; Tepperberg, J.; Carboni, M.; Roelcke, U.; Seeck, M.; van Mierlo, P.; Gschwind, M.; and Vulliemoz, S. Interictal epileptogenic zone localization in patients with focal epilepsy using electric source imaging and directed functional connectivity from low-density EEG. Epilepsia Open, 4(2): 281-292. 2019.
Interictal epileptogenic zone localization in patients with focal epilepsy using electric source imaging and directed functional connectivity from low-density EEG [link]Paper   doi   link   bibtex   abstract   1 download  
Tourbier, S.; Aleman-Gomez, Y.; Griffa, A.; Bach Cuadra, M.; and Hagmann, P. Multi-Scale Brain Parcellator: a BIDS App for the Lausanne Connectome Parcellation. In 25th Annual Meeting of the Organization for Human Brain Mapping (OHBM), Roma, Italie, June 2019.
Multi-Scale Brain Parcellator: a BIDS App for the Lausanne Connectome Parcellation [link]Paper   link   bibtex   1 download  
Glomb, K.; Kringelbach, M. L; Deco, G.; Hagmann, P.; Pearson, J.; and Atasoy, S. Functional harmonics reveal multi-dimensional basis functions underlying cortical organization. bioRxiv,699678. 2019.
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  2018 (12)
Rubega, M.; Carboni, M.; Seeber, M.; Vulliemoz, S.; and Michel, C. M. Estimating EEG source dipoles based on singular-value decomposition for connectivity analysis. In Alpine Brain Imaging Meeting, Champéry, Switzerland, January 7-11, 2018, 2018.
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Pascucci, D.; Rubega, M.; Carboni, M.; Vulliemoz, S.; Michel, C. M.; and Plomp, G. A constrained Kalman filter approach to inform dynamic functional connectivity with anatomical priors: a simulation study. In Alpine Brain Imaging Meeting, Champéry, Switzerland, January 7-11, 2018, 2018.
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Carboni, M.; Rubega, M.; Toscano, G.; van Mierlo, P.; Pittau, F.; Seek, M.; Michel, C. M.; and Vulliemoz, S. Increased network segregation as a bio-marker in focal epilepsy. In Alpine Brain Imaging Meeting, Champéry, Switzerland, January 7-11, 2018, 2018.
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Seeber, M.; Rubega, M.; ; and Michel, C. M. Leakage correction for EEG source space analyses on spatial resolution properties. In Alpine Brain Imaging Meeting, Champéry, Switzerland, January 7-11, 2018, 2018.
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Tourbier, S.; Pizzolato, M.; Carboni, M.; Pascucci, D.; Rubega, M.; Vuillemoz, S.; Plomp, G.; Michel, C. M.; Thiran, J.; and Hagmann, P. Adopting the Brain Imaging Data Structure in the Connectome Mapper. In Alpine Brain Imaging Meeting, Champéry, Switzerland, January 7-11, 2018, Champéry, 2018.
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Marquis, R.; Van Mierlo, P.; Baud, M.; Mégevand, P.; Spinelli, L.; and Vulliémoz, S. Conduction delays as estimated by cortico-cortical evoked potentials. In Alpine Brain Imaging Meeting, Champéry, January 2018.
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Marquis, R.; Spinelli, L.; Baud, M.; Carboni, M.; Mégevand, P.; Michel, C.; Momjian, S.; Schaller, K.; Van Mierlo, P.; Seeck, M.; and Vulliémoz, S. Localising scalp-invisible interictal epileptic spikes using simultaneous scalp and stereo-EEG. In Schweizerische Gesellschaft für Klinische Neurophysiologie Congress, Aarau, Switzerland, May 2018.
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Rubega, M.; Carboni, M.; Seeber, M.; Pascucci, D.; Tourbier, S.; Toscano, G.; Van Mierlo, P.; Hagmann, P.; Plomp, G.; Vulliemoz, S.; and Michel, C. M. Estimating EEG Source Dipole Orientation Based on Singular-value Decomposition for Connectivity Analysis. Brain Topography. Dec 2018.
Estimating EEG Source Dipole Orientation Based on Singular-value Decomposition for Connectivity Analysis [link]Paper   doi   link   bibtex   abstract   1 download  
Pizzolato, M.; Canales-Rodriguez, E. J.; Daducci, A.; and Thiran, J. Multimodal microstructure imaging: combining relaxometry and diffusometry to estimate myelin, intracellular, extracellular, and cerebrospinal fluid properties. In In proceedings of ISMRM 26th Annual Meeting, Venice, Italy, 2018.
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Pizzolato, M.; Wassermann, D.; Deriche, R.; Thiran, J.; and Fick, R. Orientation-Dispersed Apparent Axon Diameter via Multi-Stage Spherical Mean Optimization. In Computational Diffusion MRI, MICCAI, Granada, Spain, Granada, Spain, 2018.
Orientation-Dispersed Apparent Axon Diameter via Multi-Stage Spherical Mean Optimization [link]Paper   link   bibtex   abstract   1 download  
Verhoeven, T.; Coito, A.; Plomp, G.; Thomschewski, A.; Pittau, F.; Trinka, E.; Wiest, R.; Schaller, K.; Michel, C.; Seeck, M.; Dambre, J.; Vulliemoz, S.; and van Mierlo, P. Automated diagnosis of temporal lobe epilepsy in the absence of interictal spikes. Neuroimage Clin, 17: 10-15. 2018.
Automated diagnosis of temporal lobe epilepsy in the absence of interictal spikes [link]Paper   doi   link   bibtex   1 download  
van Mierlo, P.; Lie, O.; Staljanssens, W.; Coito, A.; and Vulliemoz, S. Influence of Time-Series Normalization, Number of Nodes, Connectivity and Graph Measure Selection on Seizure-Onset Zone Localization from Intracranial EEG. Brain Topogr, 31(5): 753-766. 2018.
Influence of Time-Series Normalization, Number of Nodes, Connectivity and Graph Measure Selection on Seizure-Onset Zone Localization from Intracranial EEG [link]Paper   doi   link   bibtex  
  2017 (2)
van Mierlo, P.; Strobbe, G.; Keereman, V.; Birot, G.; Gadeyne, S.; Gschwind, M.; Carrette, E.; Meurs, A.; Van Roost, D.; Vonck, K.; Seeck, M.; Vulliemoz, S.; and Boon, P. Automated long-term EEG analysis to localize the epileptogenic zone. Epilepsia Open, 2(3): 322-333. 2017.
Automated long-term EEG analysis to localize the epileptogenic zone [link]Paper   doi   link   bibtex   abstract  
Staljanssens, W.; Strobbe, G.; Van Holen, R.; Keereman, V.; Gadeyne, S.; Carrette, E.; Meurs, A.; Pittau, F.; Momjian, S.; Seeck, M.; Boon, P.; Vandenberghe, S.; Vulliemoz, S.; Vonck, K.; and van Mierlo, P. EEG source connectivity to localize the seizure onset zone in patients with drug resistant epilepsy. Neuroimage Clin, 16: 689-698. 2017.
EEG source connectivity to localize the seizure onset zone in patients with drug resistant epilepsy [link]Paper   doi   link   bibtex   abstract  
  in press (1)
Carboni, M; Rubega, M; Iannotti, G R; De Stefano, P; Toscano, G; Tourbier, S; Pittau, F; Hagmann, P; Momjian, S; Schaller, K; Seeck, M; Michel, C M; van Mierlo, P; and Vulliemoz, S The network integration of epileptic activity in relation to surgical outcome. Clinical Neurophysiology. in press.
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Sinergia Consortium Brain Connectomics

Project keywords

  • Brain Connectomics
  • Effective Connectivity
  • Communication through Coherence
  • Diffusion MRI
  • Microstructural Imaging
  • Electrical Source Imaging
  • Functional Brain Dynamics
  • Epilepsy

Principal investigators

Prof. Patric Hagmann (lead)

Radiology Research Center
Department of Radiology
Lausanne University Hospital (CHUV)
Rue Centrale 7, 4th floor
CH-1003 Lausanne
Switzerland

Prof. Serge Vulliémoz

EEG and Epilepsy Unit
Department of Neurology
University Hospital of Geneva
Rue Gabrielle Perret-Gentil 4
CH-1205 Geneva
Switzerland

Prof. Christoph Michel

Faculty of Medicine
Faculty of Medicine
University of Geneva
Campus Biotech
Chemin des Mines 9
CH-1202 Geneva Switzerland

Prof. Jean-Philippe Thiran

Signal Processing Laboratory (LTS5)
EPFL-STI-IEL-LTS5
Station 11
CH-1015 Lausanne
Switzerland

Partners

Prof. Gijs Plomp

Department of Psychology
University of Fribourg
Rue P.-A.-de-Faucigny 2
CH-1700 Fribourg
Switzerland

Prof. Pieter Van Mierlo

ELIS Electronics and Information Systems
Ghent University
Technologiepark-Zwijnaarde 15
BE-9000 Gent
Belgium

Prof. Gustavo Deco

Computational Neuroscience Research Group
Department of Information and Communication Technologies
Universidad Pompeu Fabra / ICREA
Roc Boronat, 138
ES-08018 Barcelona